Tutorials

These are step by step tutorials to follow to use MartiniGlass practically. It is recommended that they are followed in order. The requirements for the tutorials are that you have MartiniGlass installed in your Python environment, and that you have a version of Gromacs installed and sourced.

Note

Throughout the tutorials, commands displayed as:

$ command

with a $ sign are intended to be executed on the command line. Commands listed as

% command

with a % sign are intended to be executed within the VMD Tk console.

• Non protein systems
• Elastic Networks
• Go models
• Multiple Go models
• Secondary Structure
• Protein bead sizes