Tutorials
*********

These are step by step tutorials to follow to use MartiniGlass practically. It is recommended that
they are followed in order. The requirements for the tutorials are that you have MartiniGlass
installed in your Python environment, and that you have a version of Gromacs installed and sourced.



.. note::
    Throughout the tutorials, commands displayed as:

    .. code-block::

        $ command

    with a ``$`` sign are intended to be executed on the command line. Commands listed as

    .. code-block::

        % command

    with a ``%`` sign are intended to be executed within the VMD Tk console.

.. toctree::
    :maxdepth: 1

    non_protein
    elastic_networks
    go_models
    multiple_go
    secondary_structure
    protein_bead_sizes